Table 1 Liner B-cell epitopes predicted from NA and HA antigens
From: A computational approach to design a multiepitope vaccine against H5N1 virus
No | Start | End | IEDB | BepiPred 2.0 |
|---|---|---|---|---|
HA protein | ||||
2 | 40 | 70 | VTVTHAQDILEKTHNGKLCDLDGVKPLILRD | VTVTHAQDILEKTHNGKLCDLDGVKPLILRD |
3 | 82 | 90 | MCDEFINVP | MCDEFINVP |
4 | 100 | 156 | NPNNDLCYPGSFNDYEELKHLLSRINHFEKIQIIPKNSWSDHEASSGVSAACPYLGS | NPNNDLCYPGSFNDYEELKHLLSRINHFEKIQIIPKNSWSDHEASSGVSAACPYLGS |
6 | 171 | 185 | STYPTIKKSYNNTNQ | STYPTIKKSYNNTNQ |
7 | 200 | 211 | AAEQTRLYQNPT | AAEQTRLYQNPT |
8 | 223 | 240 | QRLVPKIATRSKVNGQSG | QRLVPKIATRSKVNGQSG |
9 | 274 | 296 | KKGDSAIMKSELEYGNCNTKCQT | KKGDSAIMKSELEYGNCNTKCQT |
10 | 299 | 310 | GAINSSMPFHNI | GAINSSMPFHN |
11 | 330 | 346 | ATGLRNSPQRESRRKKR | ATGLRNSPQRESRRKKR |
12 | 359 | 397 | GWQGMVDGWYGYHHSNEQGSGYAADKESTQKAVDGVTNK | GWQGMVDGWYGYHHSNEQGSGYAADKESTQKAVDGVTNK |
16 | 410 | 420 | EAVGREFNNLE | EAVGREFNNLE |
18 | 452 | 460 | RTLDFHDSN | RTLDFHDSN |
20 | 476 | 481 | AKELGN | AKELGN |
21 | 495 | 527 | MESIRNGTYNYPQYSEEARLKREEINGVKLESV | MESIRNGTYNYPQYSEEARLKREEINGVKLESV |
NA protein | ||||
1 | 38 | 55 | IQKGNQHQAESISNTNPL | QKGNQHQAESISNTNPL |
2 | 68 | 74 | NSSLCPI | NSSLCPI |
3 | 119 | 134 | LMNDKHSNGTVKDRSP | LMNDKHSNGTVKDRSP |
5 | 193 | 206 | TDTIKSWRNNILRT | TDTIKSWRNNILRT |
6 | 226 | 236 | PSNGQASYKIF | PSNGQASYKIF |
7 | 240 | 252 | KGKVVKSVELDAP | KGKVVKSVELDAP |
9 | 303 | 323 | GDNPRPNDGTGSCGPMSPNGA | GDNPRPNDGTGSCGPMSPNGA |
12 | 342 | 370 | TKSTNSRSGFEMIWDPNGWTGTDSSFSVK | TKSTNSRSGFEMIWDPNGWTGTDSSFSVK |
13 | 376 | 381 | ITDWSG | ITDWSG |
17 | 431 | 445 | DTVSWSWPDGAELPF | DTVSWSWPDGAE |