Table 3 High similarity of nucleotide sequences of enteroviruses in all sequenced genomic regions of the 15K3/YN/CHN/2019 strain
Region | Type | Strain | Nucleotide identity% | Accession number | Disease/isolation source |
|---|---|---|---|---|---|
5’-UTR | E30 | CA-RGDS-1005/USA/2017 | 98.75 | MK238483 | Meningitis/Cerebrospinal fluid |
VP4 | E30 | 1227/RUS/2018 | 97.14 | MT281433 | NA/Cerebrospinal fluid |
VP2 | E30 | CA-RGDS-1048/USA/2017 | 96.41 | MN153801 | Meningitis/Cerebrospinal fluid |
VP3 | E30 | WQ2027G/NZ/2017 | 96.36 | MW586892 | Aseptic meningitis/Cerebrospinal fluid |
VP1 | E30 | LKZWL/CHN/2014 | 97.15 | KY048044 | Aseptic meningitis/Cerebrospinal fluid |
2Â A | E30 | CA-RGDS-1048/USA/2017 | 95.78 | MN153801 | Meningitis/Cerebrospinal fluid |
2B | E6 | P735/CHN/2013 | 92.93 | KP289439 | Hand, foot and mouth disease |
2Â C | E18 | S6363/CHN/2018 | 94.62 | MN815811 | NA/Throat swab |
3Â A | E18 | S6363/CHN/2018 | 94.38 | MN815811 | NA/Throat swab |
3B | E30 | CA-RGDS-1048/USA/2017 | 93.94 | MN153801 | Meningitis/Cerebrospinal fluid |
3Â C | E9 | KM812/CHN/2010 | 88.34 | JN596587 | Hand, foot and mouth disease/NA |
3D | E3 | 123-R2/CHN/2018 | 90.96 | MK791150 | NA/NA |
3’-UTR | E18 | S5758/CHN/2018 | 96.77 | MN815813 | NA/Throat swab |