Table 1 Summary of virus identification of contigs from tomato samples in Kenya by BLAST and their identity with closest database homologues
Sample | Length of virus contigs (nt) | Virus identified | Accession number | Similarity (%) | Query cover (%) | Identities | E-value |
|---|---|---|---|---|---|---|---|
Tom 5b | 2761 | Tomato leaf curl Arusha virus | EF194760 | 97.72 | 99 | 2698/2761 | 0 |
Tom 5b | 2765 | Tomato leaf curl Arusha virus | EF194760 | 97.69 | 100 | 2701/2765 | 0 |
Tom 46 | 2763 | Tomato leaf curl Arusha virus | EF194760 | 96.16 | 100 | 2658/2764 | 0 |
Tom 13 | 2762 | Tomato leaf curl Arusha virus | EF194760 | 95.84 | 100 | 2648/2763 | 0 |
Tom 14 | 2760 | Tomato leaf curl Arusha virus | EF194760 | 98.81 | 100 | 2729/2762 | 0 |
Tom 45 | 2763 | Tomato leaf curl Arusha virus | EF194760 | 98.84 | 100 | 2731/2763 | 0 |
Tom 39 | 2762 | Tomato leaf curl Arusha virus | EF194760 | 97.10 | 100 | 2683/2763 | 0 |
Tom 27 | 2762 | Tomato leaf curl Arusha virus | EF194760 | 98.91 | 100 | 2732/2762 | 0 |
Tom 35 | 2762 | Tomato leaf curl Arusha virus | EF194760 | 96.45 | 100 | 2665/2763 | 0 |
Tom 28 | 2763 | Tomato leaf curl Arusha virus | EF194760 | 95.98 | 100 | 2653/2764 | 0 |
Tom 37 | 2762 | Tomato leaf curl Arusha virus | EF194760 | 95.91 | 100 | 2651/2764 | 0 |
Tom 22 | 2761 | Tomato leaf curl Arusha virus | EF194760 | 96.60 | 100 | 2668/2762 | 0 |