From: Fifteen new nucleotide substitutions in variants of human papillomavirus 18 in Korea
Gene | Primer | Trial | Primer sequence (5′-3′) | Position | Size | Success rate | Ref |
---|---|---|---|---|---|---|---|
E6 | E6-a-F | 1 | AGAAACACACCACAATACTATGGCG | 86 | 661 | 86/170 | [21] |
E6-a-R | GTCGGGCTGGTAAATGTTGAT | 746 | |||||
E6-b-F | 2 | GGGACCGAAAACGGTGTAT | 55 | 611 | 11/79 | [22] | |
E6-b-R | GAAGGTCAACCGGAATTTCA | 665 | |||||
E6-c-F | 3 | GGGACCGAAAACGGTGTAT | 55 | 557 | 0/68 | [22] | |
E6-c-R | ATGTTGCCTTAGGCTCCATGC | 611 | |||||
E7 | E7-a-F | 1 | CGACAGGAACGACTCCAACGA | 540 | 431 | 165/170 | [21] |
E7-a-R | ATAAAACCAGCCGTTACAACCCGTG | 970 | |||||
L1 | L1–1-a-F | 1 | GTAACGGTCCCTTTAACCTCCTC | 5402 | 650 | 153/170 | [21] |
L1–1-a-R | CATTGTCCCTAACGTCCTCAG | 6051 | |||||
L1–2-a-F | AAGTTCCCATGCCGCCACGTCTAAT | 6002 | 505 | 162/170 | |||
L1–2-a-R | AGAGCCACTTGGAGAGGGAGAATAC | 6506 | |||||
L1–3-a-F | GCTCTATTGTTACCTCTGACTCC | 6502 | 636 | 32/170 | |||
L1–3-a-R | ATTACTTCCTGGCACGTACACGCAC | 7137 | |||||
L1–3-b-F | 2 | AGTTATGTATTTTGGGCTGTG | 6077 | 756 | 0/128 | [10] | |
L1–3-b-R | ACACCAAAGTTCCAATCCTCTAA | 6832 | |||||
L1–3-b’-F | AGTATAGCAGACATGTTGAGGAA | 6699 | 551 | 0/128 | |||
L1–3-b’-R | CATACAACATACAACAACAACCAT | 7249 | |||||
L1–3-c-F | 3 | TCCCTCTCCAAGTGGCTCTA | 6488 | 601 | 44/128 | [22] | |
L1–3-c-R | AGTGGCAGATGGAGCAGAAC | 7088 |