Table 3 Genome segment sizes and nucleotide sequence identities rotaviruses A, D and F derived from chicken with viral enteritis
From: Viral metagenomic analysis of chickens with runting-stunting syndrome in the Republic of Korea
Protein | Rotavirus A | Rotavirus D | Rotavirus F | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
Size in nucleotides (% nt identitya) | Geno-type | Size in nucleotides (% nt identity) | Size in nucleotides (% nt identity) | |||||||
02V0002G3 | 13D62 | 07D11 | 05 V0049 | 13D62 | 07D11 | 03 V0568 | 13D62 | 07D11 | ||
VP1 | 3305 | 3253 (91.6) | – | R6 | 3274 | 3154 (90.2) | 430 (90.2) | 3296 | 3247 (89.6) | 305 (87.6) |
VP2 | 2732 | 2676 (94.1) | 829 (94.8) | C6 | 2801 | 2460 (90.0) | 806 (91.7) | 2769 | 2382 (89.8) | – |
VP3 | 2583 | 2517 (91.7) | – | M7 | 2366 | 2279 (81.5) | 1520 (82.9) | 2246 | 2075 (72.6) | – |
VP4 | 2354 | 2251 (74.9) | – | P31 | 2104 | 1990 (95.5) | 1094 (88.3) | 2174 | 1848 (91.7) | – |
NSP1 | 2122 | 1693 (91.2) | 266 (92.2) | A16 | 1872 | 1676 (95.5) | 590 (96.9) | 1791 | 1657 (87.8) | – |
VP6 | 1348 | 434 (96.3) | – | I11 | 1353 | 1265 (96.4) | 343 (96.2) | 1314 | 1250 (91.5) | – |
NSP3 | 1089 | 1049 (90.2) | – | T8 | 1242 | 1110 (88.1) | 570 (87.8) | 1309 | 1197 (81.8) | – |
NSP2 | 1042 | 675 (94.8) | – | N6 | 1026 | 773 (87.7) | 567 (90.5) | 1068 | 598 (90.7) | – |
VP7 | 1066 | 1033 (94.4) | – | G19 | 1025 | 995 (86.6) | 326 (88.7) | 990 | 876 (76.5) | – |
NSP4 | 724 | 251 (93.6) | – | E10 | 765 | 466 (93.1) | 442 (92.8) | 706 | 581 (86.1) | 433 (89.4) |
NSP5 | 699 | 272 (94.1) | – | H8 | 672 | 549 (79.5) | – | 678 | 309 (87.1) | – |