T36-CAa | T36 -FL | T30-CA | SY568 (CA) | RB-AT25 (CA) | VT-AT39 (CA) | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Regionsb | Number of nts | Number of aa | nt identity (%) | aa identity (%) | nt identity (%) | aa identity (%) | nt identity (%) | aa identity (%) | nt identity (%) | aa identity (%) | nt identity (%) | aa identity (%) |
Full genome | 19,292 | 99.1 | 81.7 | 81.5 | 90.8 | 80.8 | ||||||
5′ UTR | 106 | 99.1 | 55.3 | 58.1 | 99.1 | 60.6 | ||||||
p349 | 9369 | 3123 | 99.1 | 98.9 | 72.9 | 74.5 | 73.2 | 74.9 | 90.6 | 74.5 | 73.2 | 75.1 |
RdRp | 1503 | 501 | 99.6 | 99.8 | 80.0 | 92.0 | 77.1 | 89.5 | 90.5 | 96.0 | 81.1 | 90.9 |
p33 | 912 | 304 | 98.1 | 97.7 | 84.5 | 86.8 | 84.8 | 87.1 | 85.5 | 86.8 | 85.2 | 85.5 |
p6 | 156 | 52 | 98.7 | 98.0 | 89.7 | 96.1 | 89.7 | 96.1 | 88.5 | 96.1 | 91.0 | 96.1 |
p65 (HSP70h) | 1785 | 595 | 99.3 | 99.2 | 94.1 | 96.5 | 94.1 | 96.6 | 88.4 | 94.3 | 89.2 | 95.0 |
p61 | 1608 | 536 | 99.0 | 98.1 | 95.4 | 96.6 | 96.7 | 96.8 | 94.2 | 95.9 | 88.6 | 91.8 |
p27 (CPm) | 723 | 241 | 98.9 | 100.0 | 93.9 | 95.4 | 88.8 | 94.6 | 93.8 | 95.0 | 89.4 | 95.8 |
p25 (CP) | 672 | 224 | 99.7 | 99.6 | 93.2 | 96.4 | 93.6 | 95.5 | 93.8 | 95.5 | 93.3 | 96.0 |
p18 | 504 | 168 | 99.4 | 99.4 | 95.2 | 95.8 | 92.7 | 94.0 | 96.2 | 95.2 | 58.4 | 95.2 |
p13 | 360 | 120 | 98.9 | 99.2 | 91.7 | 92.4 | 90.8 | 89.1 | 94.4 | 93.3 | 91.4 | 92.4 |
p20 | 549 | 183 | 99.1 | 97.8 | 88.5 | 92.3 | 91.4 | 96.2 | 90.5 | 93.4 | 90.7 | 94.5 |
p23 | 630 | 210 | 98.6 | 99.0 | 90.5 | 89.5 | 90.8 | 90.4 | 88.3 | 88.0 | 91.3 | 90.9 |
3′ UTR | 273 | 99.6 | 97.4 | 97.8 | 97.1 | 97.1 |