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Table 5 Estimates of selection pressure on the coding regions of twelve Tomato leaf curl virus Arusha virus -like isolates from Kenya

From: Metagenomic analyses and genetic diversity of Tomato leaf curl Arusha virus affecting tomato plants in Kenya

Coding regiona

Total number of sites

log L

dN

dS

dN/dS

Number of sitesb

Positive or diversifying selection

Negative or purifying selection

V1

114

 − 651.20

0.0363

0.1757

0.2067

0

1

V2

258

 − 1483.95

0.0150

0.2212

0.0677

0

3

C1

364

 − 2392.81

0.0847

0.2124

0.3986

0

11

C2

135

 − 856.05

0.0607

0.2085

0.2908

0

1

C3

134

 − 708.30

0.0307

0.1184

0.2590

0

2

C4

85

 − 509.31

0.0392

0.0341

1.1491

0

0

  1. aV1: Movement protein gene, V2: Coat protein gene, C1: Replication-associated protein gene, C2: Transcriptional activator protein gene, C3: Replication enhancer protein gene, C4: C4 protein gene
  2. bSelected at P ≤ 0.1