Metagenomic analyses and genetic diversity of Tomato leaf curl Arusha virus affecting tomato plants in Kenya

Table 3 Identification of Kenyan Tomato leaf curl virus Arusha virus-like isolates as parents of putative recombinant tomato begomoviruses using the RDP4 software

Recombinants^a	Potential parents^b		Recombination breakpoints	Average p values in detecting algorithms^c
Recombinants^a	Minor	Major	Recombination breakpoints	R	G	B	M	C	S	T
ToLCArV	ToLCUV	ToLCArV	158–524	2.42E−06	2.04E−04	–	7.13E−09	4.67E−10	–	1.68E−12
TZTen05-Tanzania (DQ519575)	Iganga-Uganda (DQ127170)	Tom5a-Kenya (MN894493)	158–524	2.42E−06	2.04E−04	–	7.13E−09	4.67E−10	–	1.68E−12
ToLCDiV	ToLCArV	ToLCMohV	1091–1583	1.48E−12	4.75E−12	1.32 E−10	1.04E−10	1.17E−05	–	4.29E−04
Namakely-Madagascar (AM701765)	Tom39-Kenya (MN894499)	Moheli-Comoros (AM701763)	1091–1583	1.48E−12	4.75E−12	1.32 E−10	1.04E−10	1.17E−05	–	4.29E−04

^aToLCArV: Tomato leaf curl virus Arusha virus, ToLCDiV: Tomato leaf curl Diana virus
^bToLCUV: ToLCUV: Tomato leaf curl Uganda virus, ToLCMohV: Tomato leaf curl Moheli virus
^cR: RDP, G: GENECONV, B: BootScan, M: MaxChi, C: Chimaera, S: SiScan, T: 3Seq

ISSN: 1743-422X