Skip to main content

Table 4 Expression of differentially expressed miRNAs and targeted mRNA genes analyzed

From: Identification of microRNAs regulated by tobacco curly shoot virus co-infection with its betasatellite in Nicotiana benthamiana

ID miRNAlog2(TbCSV/TbCSB / Mock)qRT-PCRID target geneqRT-PCRFunctional annotation
miR156a1.27(up)4.47(up)Niben101Scf19266g010020.82(down)Squamosa promoter-binding protein
miR156d-5p1.05(up)7.97(up)Niben101Scf10743g020130.51(down)Squamosa promoter-binding-like protein
miR164a-5p−1.05(down)−0.36(down)Niben101Scf02318g030121.76(up)NAC domain-containing protein
Niben101Scf04745g020094.45(up)NAC domain-containing protein
miR169c1.23(up)2.95(up)Niben101Scf15723g000030.67(down)YA2
Niben101Scf10191g010070.36(down)Nuclear transcription factor Y subunit A
miR171b−1.15 (down)−0.79(down)Niben101Scf03072g030072.35(up)GRAS family transcription factor
Niben101Scf03693g080081.72(up)GRAS family transcription factor
miR1919c-5p1.10(up)1.34(up)Niben101Scf02655g010010.76(down)conserved hypothetical protein
miR43761.39(up)2.41(up)Niben101Scf04808g000070.30(down)calcium-transporting ATPase
miR482a1.24 (up)5.34(up)Niben101Scf01683g070070.71(down)Cyclin-dependent kinase
Niben101Scf01052g060020.56(down)Disease resistance protein (NB-ARC)
Niben101Scf01941g010050.62(down)Disease resistance protein (NB-ARC)
miR1590.36(up)2.42(up)Niben101Scf11569g000020.84(down)MYB-like transcription factor
novel 1211.53(up)2.55(up)Niben101Scf00504g020010.68(down)Heavy metal transport
Niben101Scf02139g050010.51(down)Heavy metal transport
novel 70−1.91(down)−0.12(down)Niben101Scf02825g000221.96(up)fiber protein Fb11
Niben101Scf00578g040022.11(up)Transcription factor
novel 711.61 (up)6.50(up)Niben101Scf12157g000010.51(down)N-acetyltransferase 10 homolog
Niben101Scf03820g000070.16(down)N-acetyltransferase 10 homolog
novel 94−1.93(down)−0.25(down)Niben101Scf19336g000043.90(up)1-aminocyclopropane-1-carboxylate oxidase
Niben101Scf04528g120093.62(up)GRAS family transcription factor