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Table 4 Expression of differentially expressed miRNAs and targeted mRNA genes analyzed

From: Identification of microRNAs regulated by tobacco curly shoot virus co-infection with its betasatellite in Nicotiana benthamiana

ID miRNA

log2(TbCSV/TbCSB / Mock)

qRT-PCR

ID target gene

qRT-PCR

Functional annotation

miR156a

1.27(up)

4.47(up)

Niben101Scf19266g01002

0.82(down)

Squamosa promoter-binding protein

miR156d-5p

1.05(up)

7.97(up)

Niben101Scf10743g02013

0.51(down)

Squamosa promoter-binding-like protein

miR164a-5p

−1.05(down)

−0.36(down)

Niben101Scf02318g03012

1.76(up)

NAC domain-containing protein

Niben101Scf04745g02009

4.45(up)

NAC domain-containing protein

miR169c

1.23(up)

2.95(up)

Niben101Scf15723g00003

0.67(down)

YA2

Niben101Scf10191g01007

0.36(down)

Nuclear transcription factor Y subunit A

miR171b

−1.15 (down)

−0.79(down)

Niben101Scf03072g03007

2.35(up)

GRAS family transcription factor

Niben101Scf03693g08008

1.72(up)

GRAS family transcription factor

miR1919c-5p

1.10(up)

1.34(up)

Niben101Scf02655g01001

0.76(down)

conserved hypothetical protein

miR4376

1.39(up)

2.41(up)

Niben101Scf04808g00007

0.30(down)

calcium-transporting ATPase

miR482a

1.24 (up)

5.34(up)

Niben101Scf01683g07007

0.71(down)

Cyclin-dependent kinase

Niben101Scf01052g06002

0.56(down)

Disease resistance protein (NB-ARC)

Niben101Scf01941g01005

0.62(down)

Disease resistance protein (NB-ARC)

miR159

0.36(up)

2.42(up)

Niben101Scf11569g00002

0.84(down)

MYB-like transcription factor

novel 121

1.53(up)

2.55(up)

Niben101Scf00504g02001

0.68(down)

Heavy metal transport

Niben101Scf02139g05001

0.51(down)

Heavy metal transport

novel 70

−1.91(down)

−0.12(down)

Niben101Scf02825g00022

1.96(up)

fiber protein Fb11

Niben101Scf00578g04002

2.11(up)

Transcription factor

novel 71

1.61 (up)

6.50(up)

Niben101Scf12157g00001

0.51(down)

N-acetyltransferase 10 homolog

Niben101Scf03820g00007

0.16(down)

N-acetyltransferase 10 homolog

novel 94

−1.93(down)

−0.25(down)

Niben101Scf19336g00004

3.90(up)

1-aminocyclopropane-1-carboxylate oxidase

Niben101Scf04528g12009

3.62(up)

GRAS family transcription factor