Identification of microRNAs regulated by tobacco curly shoot virus co-infection with its betasatellite in Nicotiana benthamiana

Du, Jiang; Wu, Gentu; Zhou, Zhongpiao; Zhang, Jiayuan; Li, Mingjun; Sun, Miao; Jiang, Kairong; Qing, Ling

doi:10.1186/s12985-019-1234-5

Virology Journal

Table 3 miRNAs expressed differentially between the TbCSV/TbCSB and Mock

From: Identification of microRNAs regulated by tobacco curly shoot virus co-infection with its betasatellite in Nicotiana benthamiana

miRNA	TbCSV/TbCSB			Mock	Fold-change	P-value	Mode	Sig-lable
name	Counts	Normalized	Counts	Normalized	log₂(TbCSV/TbCSB/ Mock)	P-value	Mode	Sig-lable
novel-10	887	2212.16	633	1561.89	0.61	2.29E-26	up	**
novel-103	75	187.05	55	135.71	0.57	0.0042	up	**
novel-104	27	67.34	44	108.57	−0.59	0.0018	down	**
novel-105	17	42.40	64	157.92	−1.79	3.96E-17	down	**
novel-112	2161	5389.50	1656	4086.07	0.50	3.20E-41	up	**
novel-113	9	22.45	24	59.22	−1.30	3.42E-05	down	**
novel-115	51	127.19	118	291.16	−1.09	4.40E-16	down	**
novel-121	56	139.66	21	51.82	1.53	9.87E-11	up	**
novel-127	118	294.29	249	614.39	−0.96	6.72E-27	down	**
novel-128	8	19.95	15	37.01	− 0.79	0.0227	down	*
novel-129	214	533.71	124	305.96	0.91	2.51E-15	up	**
novel-131	32	79.81	0	0.00	7.37	1.64E-19	up	**
novel-133	43	107.24	90	222.07	−0.95	1.59E-10	down	**
novel-137	23	57.36	46	113.50	−0.88	1.45E-05	down	**
novel-138	39	97.27	27	66.62	0.65	0.0163	up	*
novel-140	8	19.95	2	4.93	2.12	0.0019	up	**
novel-142	4	9.98	9	22.21	−1.05	0.0290	down	*
novel-15	723	1803.15	553	1364.49	0.51	5.49E-15	up	**
novel-16	348	867.91	745	1838.24	−0.98	1.73E-79	down	**
novel-18	320	798.07	218	537.90	0.67	8.97E-13	up	**
novel-21	365	910.30	265	653.87	0.58	7.87E-11	up	**
novel-31	244	608.53	176	434.27	0.59	6.23E-08	up	**
novel-32	113	281.82	239	589.72	−0.96	5.22E-26	down	**
novel-42	135	336.69	103	254.15	0.51	0.00067	up	**
novel-5	3355	8367.31	6145	15,162.39	−0.75	0	down	**
novel-50	104	259.37	67	165.32	0.75	4.54E-06	up	**
novel-52	64	159.61	115	283.76	−0.73	2.89E-09	down	**
novel-6	3704	9237.71	1040	2566.13	1.95	0	up	**
novel-60	19	47.39	34	83.89	−0.72	0.0013	down	**
novel-61	56	139.66	40	98.70	0.60	0.0078	up	**
novel-66	55	137.17	87	214.67	−0.54	3.32E-05	down	**
novel-69	6	14.96	39	96.23	−2.58	5.08E-16	down	**
novel-70	11	27.43	45	111.03	−1.91	2.03E-13	down	**
novel-71	45	112.23	16	39.48	1.61	1.64E-09	up	**
novel-75	21	52.37	38	93.76	−0.74	0.0006	down	**
novel-78	11	27.43	23	56.75	−0.95	0.0012	down	**
novel-82	14	34.92	8	19.74	0.93	0.0387	up	*
novel-9	687	1713.37	1732	4273.60	−1.22	1.30E-248	down	**
novel-91	29	72.33	14	34.54	1.17	0.0002	up	**
novel-92	45	112.23	82	202.33	−0.75	3.09E-07	down	**
novel-94	7	17.46	29	71.56	−1.93	2.99E-09	down	**
novel-96	1	2.49	4	9.87	−1.88	0.0302	down	*
miR156a	224	558.65	101	249.21	1.27	2.70E-28	up	**
miR156d-5p	401	1000.09	210	518.16	1.05	9.17E-36	up	**
miR160a	747	1863.01	554	1366.96	0.55	2.04E-18	up	**
miR164a-5p	655	1633.56	1469	3624.66	−1.05	1.32E-170	down	**
miR168b-3p	670	1670.97	477	1176.97	0.61	1.55E-20	up	**
miR169a	2	4.99	0	0.00	3.37	0.0423	up	*
miR169c	13	32.42	6	14.80	1.23	0.0094	up	**
miR171b	443	1104.83	1070	2640.16	−1.15	2.75E-143	down	**
miR1919c-5p	89	221.96	45	111.03	1.10	8.28E-10	up	**
miR390a-3p	2	4.99	0	0.00	3.37	0.0423	up	*
miR395a	49	122.21	32	78.96	0.73	0.0022	up	**
miR4376	1091	2720.94	451	1112.81	1.39	1.24E-153	up	**
miR482a	25,539	63,693.84	11,753	28,999.78	1.24	0	up	**

* represnt Fold-change (log₂ TbCSV/TbCSB/Mock) > 1.0 or Fold-change (log₂ TbCSV/TbCSB/Mock) < −1.0, and 0.01 < =P -values < 0.05; ** represnt Fold-change (log₂ TbCSV/TbCSB/Mock) > 1.0 or Fold-change (log₂ TbCSV/TbCSB/Mock) < − 1.0, and P -values < 0.01

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ISSN: 1743-422X

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