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Table 2 Distribution of small RNA sequences among the two constructed libraries

From: Identification of microRNAs regulated by tobacco curly shoot virus co-infection with its betasatellite in Nicotiana benthamiana

 

Mock

TbCSV/TbCSB

Total sRNA reads (percent %)

Unique sRNA reads (percent %)

Total sRNA reads (percent %)

Unique sRNA reads (percent %)

Total

12,671,385 (100%)

4,241,949 (100%)

10,080,639 (100%)

3,745,058 (100%)

Exon sense

470,589 (3.71%)

170,880 (4.03%)

369,364 (3.66%)

119,349 (3.19%)

Exon antisense

567,077 (4.48%)

44,166 (1.04%)

387,710 (3.85%)

44,418 (1.19%)

Intron sense

1,057,103 (8.34%)

363,908 (8.58%)

975,273 (9.67%)

349,541 (9.33%)

Intron antisense

675,481 (5.33%)

198,623 (4.68%)

505,824 (5.02%)

179,369 (4.79%)

miRNA

408,746 (3.22%)

1501 (0.04%)

404,032 (4.01%)

1488 (0.04%)

rRNA

638,241 (5.04%)

31,900 (0.75%)

443,250 (4.4%)

27,223 (0.73%)

tRNA

1 (0%)

1 (0%)

1 (0%)

1 (0%)

snRNA

3576 (0.03%)

841 (0.02%)

3584 (0.04%)

1054 (0.03%)

snoRNA

26,219 (0.21%)

1688 (0.04%)

17,338 (0.17%)

1678 (0.04%)

Repeat

3,991,675 (31.5%)

801,555 (18.9%)

2,985,768 (29.62%)

741,474 (19.8%)

NAT

297,399 (2.35%)

9280 (0.22%)

186,878 (1.85%)

7343 (0.2%)

TAS

15,340 (0.12%)

688 (0.02%)

15,305 (0.15%)

704 (0.02%)

Unannotated

4,519,938 (35.67%)

2,616,918 (61.69%)

3,786,312 (37.56%)

2,271,416 (60.65%)