Genome segments | Intergenic region (IR) | Predicted proteins | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Type | Length (nt) | Percent nt identity to MeCSV E11–018 | PCR primers used for JKI 29327 | Length (nt) | Percent nt identity to MeCSV E11–018 | ORF | Putative functions | Length (aa) | Size (kDa) | Percent aa identity to MeCSV E11–018 | |
Name | Sequence | ||||||||||
RNA1 | 9092 | 82.4 | HZ-603 | 5′ ACA GAA GTG GAA TGG GCT GG 3’ | NA | NA | ORF1 | RNA-dependent RNA polymerase | 2940 | 340 | 92.1 |
HZ-604 | 5′ GCA ACA CCC TCA TCA CTC CA 3’ | ||||||||||
RNA2 | 1847 | 84.6 | HZ-605 | 5′ AGC TCA GTA ACC GGA ACT GC 3’ | 50 | 100 | ORF2a | no match | 373 | 43.6 | 87.7 |
HZ-606 | 5′ CGC AAT AGC AGG GTC CAG AT 3’ | ORF2b | no match | 196 | 43.7 | 87.3 | |||||
RNA3 | 1598 | 85.8 | HZ-607 | 5′ TGG TGC CAG AAG GAA AGG AC 3’ | 157 | 72.6 | ORF3a | no match | 195 | 23.2 | 93.3 |
HZ-608 | 5′ GGC AAT GCC TCA CAA TCG TC 3’ | ORF3b | no match | 235 | 27.6 | 89.8 | |||||
RNA4 | 1591 | 78.3 | HZ-609 | 5′ AAG TAA GGG CAG GCT GAA CC 3’ | NA | NA | ORF4 | nucleocapsid protein | 305 | 33.6 | 88.2 |
HZ-610 | 5′ AGG CTT TCT GCT AAG TGG GC 3’ | ||||||||||
RNA5 | 1547 | 81.7 | HZ-611 | 5′ GAA CTG TAC CGC TGA TGG GT 3’ | 446 | 68.3 | ORF5a | no match | 210 | 23.2 | 93.3 |
HZ-612 | 5′ CTT TGG TCT GGA GCT GTG CT 3’ | ORF5b | no match | 114 | 13 | 95.6 | |||||
RNA6 | 1509 | 84.7 | HZ-613 | 5′ CGC ATC CTG AAT CCC ATC TCT 3’ | NA | NA | ORF6 | no match | 400 | 45.5 | 91.2 |
HZ-614 | 5′ GCT GGC ATC ACT AGA CGG AT 3’ | ||||||||||
RNA7 | 1392 | 73.2 | HZ-615 | 5′ ATC AGG TGT TAG CTG GCC AC 3’ | 586 | 55.6 | ORF7a | no match | 84 | 9.8 | 90.5 |
HZ-616 | 5′ TAA CCA CCT TCC CTG CTG TG 3’ | ORF7b | no match | 143 | 15.9 | 80.6 | |||||
RNA8 | 1229 | 68.7 | HZ-617 | 5′ ACC CTA AGT GGA TCC GAG GT 3’ | 446 | 58.3 | ORF8a | no match | 93 | 10.9 | 94.8 |
HZ-618 | 5′ AGT TCC AAG TTG CCC TGC TT 3’ | ORF8b | no match | 115 | 12.9 | 97.2 |