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Table 1 The genome characteristics of melon chlorotic spot virus (MeCSV) isolate (JKI 29327) from Austria; nt and aa sequence identities of the 8 RNA segments compared to the respective homologous regions in the genome of MeCSV isolate E11–018 from France and the list of primers used for segment identification

From: A divergent strain of melon chlorotic spot virus isolated from black medic (Medicago lupulina) in Austria

Genome segments

Intergenic region (IR)

Predicted proteins

Type

Length (nt)

Percent nt identity to MeCSV E11–018

PCR primers used for JKI 29327

Length (nt)

Percent nt identity to MeCSV E11–018

ORF

Putative functions

Length (aa)

Size (kDa)

Percent aa identity to MeCSV E11–018

Name

Sequence

RNA1

9092

82.4

HZ-603

5′ ACA GAA GTG GAA TGG GCT GG 3’

NA

NA

ORF1

RNA-dependent RNA polymerase

2940

340

92.1

HZ-604

5′ GCA ACA CCC TCA TCA CTC CA 3’

RNA2

1847

84.6

HZ-605

5′ AGC TCA GTA ACC GGA ACT GC 3’

50

100

ORF2a

no match

373

43.6

87.7

HZ-606

5′ CGC AAT AGC AGG GTC CAG AT 3’

ORF2b

no match

196

43.7

87.3

RNA3

1598

85.8

HZ-607

5′ TGG TGC CAG AAG GAA AGG AC 3’

157

72.6

ORF3a

no match

195

23.2

93.3

HZ-608

5′ GGC AAT GCC TCA CAA TCG TC 3’

ORF3b

no match

235

27.6

89.8

RNA4

1591

78.3

HZ-609

5′ AAG TAA GGG CAG GCT GAA CC 3’

NA

NA

ORF4

nucleocapsid protein

305

33.6

88.2

HZ-610

5′ AGG CTT TCT GCT AAG TGG GC 3’

RNA5

1547

81.7

HZ-611

5′ GAA CTG TAC CGC TGA TGG GT 3’

446

68.3

ORF5a

no match

210

23.2

93.3

HZ-612

5′ CTT TGG TCT GGA GCT GTG CT 3’

ORF5b

no match

114

13

95.6

RNA6

1509

84.7

HZ-613

5′ CGC ATC CTG AAT CCC ATC TCT 3’

NA

NA

ORF6

no match

400

45.5

91.2

HZ-614

5′ GCT GGC ATC ACT AGA CGG AT 3’

RNA7

1392

73.2

HZ-615

5′ ATC AGG TGT TAG CTG GCC AC 3’

586

55.6

ORF7a

no match

84

9.8

90.5

HZ-616

5′ TAA CCA CCT TCC CTG CTG TG 3’

ORF7b

no match

143

15.9

80.6

RNA8

1229

68.7

HZ-617

5′ ACC CTA AGT GGA TCC GAG GT 3’

446

58.3

ORF8a

no match

93

10.9

94.8

HZ-618

5′ AGT TCC AAG TTG CCC TGC TT 3’

ORF8b

no match

115

12.9

97.2