| ORF1 | ORF2 | ORF3 | ORF4 | ORF5 | ORF6 | Total | ||||||||
Nt | (%) | Nt | (%) | Nt | (%) | Nt | (%) | Nt | (%) | Nt | (%) | Nt | (%) | ||
Nucleotide substitutions | Ti | 260 | 81.0 | 22 | 81.5 | 12 | 85.7 | 4 | 100 | 3 | 100 | 1 | 100 | 302 | 81.6 |
Tv | 61 | 19.0 | 5 | 18.5 | 2 | 14.3 | 0 | 0 | 0 | 0 | 0 | 0 | 68 | 18.4 | |
Ti/Tv | 4.26 | 4.40 | 6.00 | – | – | – | 4.44 | ||||||||
S | 232 | 72.3 | 18 | 66.7 | 13 | 92.9 | 3 | 75 | 2 | 66.7 | 0 | 0 | 268 | 72.4 | |
NS | 89 | 27.7 | 9 | 33.3 | 1 | 7.1 | 1 | 25 | 1 | 33.3 | 1 | 100 | 102 | 27.6 | |
Ka/Ks | 0.38 | 0.50 | 0.08 | 0.33 | 0.50 | – | 0.38 | ||||||||
Total | 321 | 5.4 | 27 | 3.9 | 14 | 4.3 | 4 | 2.0 | 3 | 0.3 | 1 | 0.4 | 370 | 4.4 | |
 | Replicase | TGBp1 | TGBp2 | TGBp3 | CP | CRP | Total | ||||||||
Aa | (%) | Aa | (%) | Aa | (%) | Aa | (%) | Aa | (%) | Aa | (%) | Aa | (%) | ||
Amino acids substitutionsa | 0–3 | 22 | 27.5 | 2 | 28.6 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 100 | 25 | 27.5 |
4 | 22 | 27.5 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 100 | 0 | 0 | 23 | 25.3 | |
5 | 36 | 45.0 | 5 | 71.4 | 1 | 100 | 1 | 100 | 0 | 0 | 0 | 0 | 43 | 47.3 | |
Total | 80 | 4.1 | 7 | 3.1 | 1 | 0.9 | 1 | 1.5 | 1 | 0.3 | 1 | 1.1 | 91 | 3.3 |