From: Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus
Sample name | Y35AB-1 | Y35AB-2 | Y35AB-3 | Y35A-1 | Y35A-2 | Y35A-3 | CK-1 | CK-2 | CK-3 | mean |
---|---|---|---|---|---|---|---|---|---|---|
Raw reads | 12166453 | 11965470 | 13272880 | 15527372 | 12560210 | 14214740 | 12646000 | 11302705 | 11794017 | 12827761 |
Clean reads | 12032720 | 11834496 | 13118731 | 15503750 | 12537134 | 14192135 | 12633203 | 11290015 | 11782562 | 12769416 |
Clean bases | 0.60G | 0.59G | 0.66G | 0.78G | 0.63G | 0.71G | 0.63G | 0.56G | 0.59G | 0.64 |
Total mapped | 11620770 | 11438690 | 12605297 | 14934455 | 12075773 | 13732342 | 12346163 | 11139553 | 11524248 | 12379699 |
96.58% | 96.66% | 96.09% | 96.33% | 96.32% | 96.76% | 97.73% | 98.67% | 97.81% | 96.99% | |
Uniquely mapped | 8961324 | 8847537 | 9609766 | 11389720 | 9176512 | 10320807 | 9238644 | 8316046 | 8564617 | 9380553 |
74.47% | 74.76% | 73.25% | 73.46% | 73.19% | 72.72% | 73.13% | 73.66% | 72.69% | 73.48% | |
Q30 (%) | 95.74 | 95.68 | 95.58 | 96.20 | 96.08 | 96.14 | 95.76 | 95.70 | 95.80 | 95.85 |
GC contents (%) | 43.58 | 43.75 | 44.11 | 44.15 | 44.23 | 44.38 | 43.93 | 43.80 | 43.92 | 43.98 |