Skip to main content

Table 1 Summary of the results of RNA-seq data

From: Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus

Sample name

Y35AB-1

Y35AB-2

Y35AB-3

Y35A-1

Y35A-2

Y35A-3

CK-1

CK-2

CK-3

mean

Raw reads

12166453

11965470

13272880

15527372

12560210

14214740

12646000

11302705

11794017

12827761

Clean reads

12032720

11834496

13118731

15503750

12537134

14192135

12633203

11290015

11782562

12769416

Clean bases

0.60G

0.59G

0.66G

0.78G

0.63G

0.71G

0.63G

0.56G

0.59G

0.64

Total mapped

11620770

11438690

12605297

14934455

12075773

13732342

12346163

11139553

11524248

12379699

96.58%

96.66%

96.09%

96.33%

96.32%

96.76%

97.73%

98.67%

97.81%

96.99%

Uniquely mapped

8961324

8847537

9609766

11389720

9176512

10320807

9238644

8316046

8564617

9380553

74.47%

74.76%

73.25%

73.46%

73.19%

72.72%

73.13%

73.66%

72.69%

73.48%

Q30 (%)

95.74

95.68

95.58

96.20

96.08

96.14

95.76

95.70

95.80

95.85

GC contents (%)

43.58

43.75

44.11

44.15

44.23

44.38

43.93

43.80

43.92

43.98

  1. Note: Clean reads: Reads from sequencing after filtering low-quality reads. Clean bases: The number of clean reads is multiplied by the length and converted to G. Q30: The percentage of bases with a Phred value >30