Table 2 Average % pairwise identity detected among HRV amino acid sequences
From: Genome-wide diversity and selective pressure in the human rhinovirus
Genome locus | HRV ave (min, max)* | HRVA ave (min, max)** | HRVB ave (min, max)# | HRVAvsHRVB ave (min, max)$ |
|---|---|---|---|---|
Genome | 70 (50,96) | 80 (70,96) | 83 (76,92) | 51 (50,52) |
1A | 82 (52,100) | 96 (90,100) | 94 (90,99) | 56 (52,58) |
1B | 74 (57,96) | 80 (72,96) | 82 (75,89) | 61 (57,64) |
1C | 68 (48,97) | 76 (66,97) | 83 (73,92) | 53 (48,56) |
1D | 61 (37,94) | 71 (61,94) | 77 (71,86) | 40 (37,43) |
2A | 71 (34,99) | 88 (75,99) | 81 (72,92) | 37 (34,41) |
2B | 69 (40,99) | 82 (60,99) | 88 (75,98) | 45 (40,49) |
2C | 70 (47,98) | 80 (63,98) | 88 (75,95) | 49 (47,52) |
3A | 68 (41,99) | 79 (63,99) | 88 (74,96) | 47 (41,54) |
3B | 79 (52,100) | 89 (76,100) | 83 (65,100) | 60 (52,67) |
3C | 72 (43,97) | 83 (71,97) | 84 (76,96) | 49 (43,53) |
3D | 72 (54,96) | 80 (69,96) | 85 (77,91) | 57 (54,60) |